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4.         Higuchi, M., Ozaki, H., Matsui, M. & Sonoike, K. 2009. A T–DNA insertion mutant of AtHMA1 gene encoding a Cu transporting ATPase in Arabidopsis thaliana has a defect in the water–water cycle of photosynthesis. Journal of Photochemistry and Photobiology B, Biology 94, 205 – 213

5.         Johnson, X. et al. 2009. A new setup for in vivo fluorescence imaging of photosynthetic activity. Photosynthesis research 102, 85 – 93

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10.     Cséfalvay, L. et al. 2009. Pre–symptomatic detection of Plasmopara viticola infection in grapevine leaves using chlorophyll fluorescence imaging. European journal of plant pathology 125, 291 – 302

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12.     Baruah, A., Šimková, K., Apel, K. & Laloi, C. 2009. Arabidopsis mutants reveal multiple singlet oxygen signaling pathways involved in stress response and development. Plant molecular biology 70, 547 – 563

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14.     Chi, W. et al. 2008. The pentratricopeptide repeat protein DELAYED GREENING1 is involved in the regulation of early chloroplast development and chloroplast gene expression in Arabidopsis. Plant physiology 147, 573 – 584

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18.     Hacker, J., Spindelböck, J. P. & Neuner, G. 2008. Mesophyll freezing and effects of freeze dehydration visualized by simultaneous measurement of IDTA and differential imaging chlorophyll fluorescence. Plant, Cell & Environment 31, 1725 – 1733

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20.     Jančula, D., Míkovcová, M., Adámek, Z. & Maršálek, B. 2008. Changes in the photosynthetic activity of Microcystis colonies after gut passage through Nile tilapia (Oreochromis niloticus) and silver carp (Hypophthalmichthys molitrix). Aquaculture Research 39, 311 – 314

21.     Jeong, J. et al. 2008. Chloroplast Fe (III) chelate reductase activity is essential for seedling viability under iron limiting conditions. Proceedings of the National Academy of Sciences 105, 10619

22.     Kühl, M. & Polerecky, L. 2008. Functional and structural imaging of phototrophic microbial communities and symbioses. Aquatic Microbial Ecology 53, 99 – 118

23.     Oh, M. H. et al. 2008. Leaf Senescence in a Stay–Green Rice Variety, SNU–SG and a Mutant, sgr. Photosynthesis. Energy from the Sun, 1515 – 1518

24.     Petrová, Š., Soudek, P., Benešová, D. & Vaněk, T. 2008. Uptake and distribution of uranium in Armoracia rusticana. COST Action 859, 21

25.     Pineda, M., Soukupová, J., Matouš, K., Nedbal, L. & Barón, M. 2008. Conventional and combinatorial chlorophyll fluorescence imaging of tobamovirus–infected plants. Photosynthetica 46, 441 – 451

26.     Rapacz, M. et al. 2008. Photosynthetic acclimation to cold as a potential physiological marker of winter barley freezing tolerance assessed under variable winter environment. Journal of Agronomy and Crop Science 194, 61 – 71

27.     Rodríguez–Moreno, L. et al. 2008. Chlorophyll Fluorescence Imaging for Detection of Bean Response to Pseudomonas syringae in asymptomatic leaf areas. 37 – 44

28.     Rodríguez–Moreno, L. et al. 2008. Early detection of bean infection by Pseudomonas syringae in asymptomatic leaf areas using chlorophyll fluorescence imaging. Photosynthesis research 96(1), 27 – 35

29.     Roháček, K., Soukupová, J., Barták, M. & Schoefs, B. 2008. Chlorophyll fluorescence, a wonderful tool to study plant physiology and plant stress. Research Signpost, India, 41 – 104

30.     Roose, J. L. 2008. Assembly and function of cyanobacterial photosystem II. ProQuest

31.     Schliebner, I. 2008. Identifizierung und Charakterisierung von chloroplastidären Proteinkinasen mit dem Schwerpunkt auf der PPPK10. Ludwig–Maximilians–Universität München

32.     Schlüter, O. et al. 2008. Stress response of physiological active food products on high hydrostatic pressures up to 250 MPa.

33.     Soudek, P., Petrová, Š., Buzek, M., Lhotský, O. & Vaněk, T. 2008. Phytotoxicity of uranium and thorium in comparison with other heavy metals for selected higher plants. Cost action 859, 65

34.     Soukupová, J. et al. 2008. Annual variation of the steady–state chlorophyll fluorescence emission of evergreen plants in temperate zone. Functional Plant Biology 35, 63 – 76

35.     Wagner, R., Dietzel, L., Bräutigam, K., Fischer, W. & Pfannschmidt, T. 2008. The long–term response to fluctuating light quality is an important and distinct light acclimation mechanism that supports survival of Arabidopsis thaliana under low light conditions. Planta 228, 573 – 587

36.     Yabuta, Y. et al. 2008. Conversion of L–galactono–1, 4–lactone to L–ascorbate is regulated by the photosynthetic electron transport chain in Arabidopsis. Bioscience, biotechnology, and biochemistry, 72(10)2598 – 2607

37.     Yamamoto, H. & Miyake, C. 2008. Overexpression of ferredoxin in tobacco chloroplasts stimulates cyclic electron flow around photosystem I (CEF–PSI) and enhances non–photochemical quenching (NPQ) of Chl fluorescence. Photosynthesis. Energy from the Sun, 951 – 954

38.     Yoshida, K., Watanabe, C., Kato, Y., Sakamoto, W. & Noguchi, K. 2008. Influence of chloroplastic photo–oxidative stress on mitochondrial alternative oxidase capacity and respiratory properties, a case study with Arabidopsis yellow variegated 2. Plant and cell physiology 49, 592 – 603

39.     Elster, J. et al. 2008. Freezing and desiccation injury resistance in the filamentous green alga Klebsormidium from the Antarctic, Arctic and Slovakia. Biologia 63, 843 – 851

40.     Elster, J., Lukavsky, J., Harding, K., Benson, E. E. & Day, J. G. 2008. Deployment of the encapsulation/dehydration protocol to cryopreserve polar microalgae held at the Czech Republic Academy of Sciences Institute of Botany. CryoLetters 29, 27 – 28

41.     Esteban, R., Fernández–Marín, B., Becerril, J. M. & García–Plazaola, J. I. 2008. Photoprotective implications of leaf variegation in E. dens–canis L. and P. officinalis L. Journal of plant physiology 165, 1255 – 1263

42.     Lenk S, et al. 2007. Multispectral fluorescence and reflectance imaging at the leaf level and its possible applications. Journal of Experimental Botany 58(4), 807–814,

43.     Allen, M. D., Kropat, J., Tottey, S., Del Campo, J. A. & Merchant, S. S. 2007. Manganese deficiency in Chlamydomonas results in loss of photosystem II and MnSOD function, sensitivity to peroxides, and secondary phosphorus and iron deficiency. Plant physiology 143, 263 – 277

44.     Barták, M., Váczi, P., Hájek, J. & Smykla, J. 2007. Low–temperature limitation of primary photosynthetic processes in Antarctic lichens Umbilicaria antarctica and Xanthoria elegans. Polar Biology 31, 47 – 51

45.     Berger, S. et al. 2007. Visualization of dynamics of plant–pathogen interaction by novel combination of chlorophyll fluorescence imaging and statistical analysis, differential effects of virulent and avirulent strains of P. syringae and of oxylipins on A. thaliana. Journal of experimental botany 58, 797 – 806

46.     Hoewyk D, et al. 2007. Chloroplast iron-sulfur cluster protein maturation requires the essential cysteine desulfurase CpNifS. PNAS 104(13), 5686–5691

47.     Hogewoning, S. W. & Harbinson, J. 2007. Insights on the development, kinetics, and variation of photoinhibition using chlorophyll fluorescence imaging of a chilled, variegated leaf. Journal of experimental botany 58, 453 – 463

48.     Kalituho, L., Rech, J. & Jahns, P. 2007. The roles of specific xanthophylls in light utilization. Planta 225, 423 – 439

49.     Küpper, H., Parameswaran, A., Leitenmaier, B., Trtilek, M. & Šetlík, I. 2007. Cadmiuminduced inhibition of photosynthesis and longterm acclimation to cadmium stress in the hyperaccumulator Thlaspi caerulescens. New Phytologist 175, 655 – 674

50.     Lenk, S. et al. 2007. Multispectral fluorescence and reflectance imaging at the leaf level and its possible applications. Journal of experimental botany 58, 807 – 814

51.     Lichtenthaler, H. K., Ac, A., Marek, M. V., Kalina, J. & Urban, O. 2007. Differences in pigment composition, photosynthetic rates and chlorophyll fluorescence images of sun and shade leaves of four tree species. Plant Physiology and Biochemistry 45, 577 – 588

52.     López–Juez, E., Bowyer, J. R. & Sakai, T. 2007. Distinct leaf developmental and gene expression responses to light quantity depend on blue–photoreceptor or plastid–derived signals, and can occur in the absence of phototropins. Planta 227, 113 – 123

53.     Mahler, H. et al. 2007. Singlet oxygen affects the activity of the thylakoid ATP synthase and has a strong impact on its γ subunit. Planta 225, 1073 – 1083

54.     Masclaux–Daubresse, C. et al. 2007. Genetic variation suggests interaction between cold acclimation and metabolic regulation of leaf senescence. Plant physiology 143, 434 – 446

55.     Miura, E. et al. 2007. The balance between protein synthesis and degradation in chloroplasts determines leaf variegation in Arabidopsis yellow variegated mutants. The Plant Cell Online 19, 1313 – 1328

56.     Hiroshi Ozaki, Masahiko Ikeuchi, Teruo Ogawa, Hideya Fukuzawa and Kintake Sonoike. 2007. Large–scale analysis of chlorophyll fluorescence kinetics in Synechocystis sp. PCC 6803, identification of the factors involved in the modulation of photosystem stoichiometry. Plant and cell physiology 48, 451 – 458

57.     Rejmánková, E. & Sirova, D. 2007. Wetland macrophyte decomposition under different nutrient conditions, Relationships between decomposition rate, enzyme activities and microbial biomass. Soil Biology and Biochemistry 39, 526 – 538

58.     Sjödin, A. 2007. Populus transcriptomics, from noise to biology. Department of Plant Physiology, Umeå University

59.     Solymosi, K., Vitányi, B., Hideg, É. & Böddi, B. 2007. Etiolation symptoms in sunflower (Helianthus annuus) cotyledons partially covered by the pericarp of the achene. Annals of botany 99, 857 – 867

60.     Sun, X. W., Wang, L. Y. & Zhang, L. X. 2007. Involvement of DEG5 and DEG8 proteases in the turnover of the photosystem II reaction center D1 protein under heat stress in Arabidopsis thaliana. Chinese Science Bulletin 52, 1742 – 1745

61.     Vácha, F. et al. 2007. Identification of Photosystem I and Photosystem II enriched regions of thylakoid membrane by optical microimaging of cryo–fluorescence emission spectra and of variable fluorescence. Micron 38, 170 – 175

62.     Zsom, T. 2007. Az étkezési paprika minőségváltozása a szedés utáni időszak alatt, Budapesti Corvinus Egyetem

63.     Bonardi, V. 2006. Molecular–genetic characterization of thylakoid protein hosphorylation in Arabidopsis thaliana. Universitätsbibliothek

64.     Flexas, J. et al. 2006. Decreased Rubisco activity during water stress is not induced by decreased relative water content but related to conditions of low stomatal conductance and chloroplast CO2 concentration. New Phytologist 172, 73 – 82

65.     Gachon, C. M. M., Küpper, H., Küpper, F. C. & Šetlík, I. 2006. Single–cell chlorophyll fluorescence kinetic microscopy of Pylaiella littoralis (Phaeophyceae) infected by Chytridium polysiphoniae (Chytridiomycota). European Journal of Phycology 41, 395 – 403

66.     Hájek, J., Barták, M. & Dubová, J. 2006. Inhibition of photosynthetic processes in foliose lichens induced by temperature and osmotic stress. Biologia plantarum 50, 624 – 634

67.     Kalituho, L., Graßes, T., Graf, M., Rech, J. & Jahns, P. 2006. Characterization of a nonphotochemical quenching–deficient Arabidopsis mutant possessing an intact PsbS protein, xanthophyll cycle and lumen acidification. Planta 223, 532 – 541

68.     Lazár, D., Sušila, P. & Nauš, J. 2006. Early detection of plant stress from changes in distributions of chlorophyll a fluorescence parameters measured with fluorescence imaging. Journal of fluorescence 16, 173 – 176

69.     Ma, J. F., Guo, J. K., Peng, L. W., Chen, C. Y. & Zhang, L. X. 2006. Decrease of photosystem ii photochemistry in Arabidopsis ppt1 mutant is dependent on leaf age. Journal of integrative plant biology 48, 1409 – 1414

70.     Matouš, K., Benediktyová, Z., Berger, S., Roitsch, T. & Nedbal, L. 2006. Case study of combinatorial imaging, What protocol and what chlorophyll fluorescence image to use when visualizing infection of Arabidopsis thaliana by Pseudomonas syringae? Photosynthesis research 90, 243 – 253

71.     Nejad, A. R., Harbinson, J. & Van Meeteren, U. 2006. Dynamics of spatial heterogeneity of stomatal closure in Tradescantia virginiana altered by growth at high relative air humidity. Journal of experimental botany 57, 3669 – 3678

72.     Pfalz, J., Liere, K., Kandlbinder, A., Dietz, K. J. & Oelmüller, R. 2006. pTAC2,–6, and–12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. The Plant Cell Online 18, 176 – 197

73.     Pourtau, N., Jennings, R., Pelzer, E., Pallas, J. & Wingler, 2006. A. Effect of sugar–induced senescence on gene expression and implications for the regulation of senescence in Arabidopsis. Planta 224, 556 – 568

74.     Škaloudová, B., Křivan, V. & Zemek, R. 2006. Computer–assisted estimation of leaf damage caused by spider mites. Computers and electronics in agriculture 53, 81 – 91

75.     Titiz, O. et al. 2006. PDX1 is essential for vitamin B6 biosynthesis, development and stress tolerance in Arabidopsis. The Plant Journal 48, 933 – 946

76.     Žabka, M., Drastichová, K., Jegorov, A., 2006. Soukupová, J. & Nedbal, L. Direct evidence of plant–pathogenic activity of fungal metabolites of Trichothecium roseum on apple. Mycopathologia 162, 65 – 68

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78.     Antunes, M. S. et al. 2006. A synthetic degreening gene circuit provides a reporting system that is remotely detectable and has a reset capacity. Plant biotechnology journal 4, 605 – 622

79.     Coll, N. S. 2006. Identification and characterization of soldat8, a suppressor of the cell death program activated by singlet oxygen in Arabidopsis seedlings. Swiss federal institute of technology zurich. Diss. ETH No. 16511

80.     Aldea, M., Frank, T. D. & DeLucia. 2006. E. H. A method for quantitative analysis of spatially variable physiological processes across leaf surfaces. Photosynthesis research 90, 161 – 172

81.     Barták, M., Solhaug, K. A., Vráblíková, H. & Gauslaa, Y. 2006. Curling during desiccation protects the foliose lichen Lobaria pulmonaria against photoinhibition. Oecologia 149, 553 – 560

82.     Christ, M. M. 2005. Temporal and Spatial Patterns of Growth and Photosynthesis in Leaves of Dicotyledonous Plants Under Long–Term CO2–and O3–Exposure, Universitäts–und Landesbibliothek Düsseldorf

83.     Diaz, C. et al. 2005. Characterization of markers to determine the extent and variability of leaf senescence in Arabidopsis. A metabolic profiling approach. Plant physiology 138, 898 – 908

84.     Fey, V. 2005. Mediation of photosynthetic redox signals in the regulation of plant gene expression. Thüringer Universitäts–und Landesbibliothek

85.     Förster, B., Osmond, C. B. & Pogson, B. J. 2005. Improved survival of very high light and oxidative stress is conferred by spontaneous gain–of–function mutations in Chlamydomonas. Biochimica et Biophysica Acta (BBA)–Bioenergetics 1709, 45 – 57

86.     Fujimori, T. et al. 2005. The mutant of sll1961, which encodes a putative transcriptional regulator, has a defect in regulation of photosystem stoichiometry in the cyanobacterium Synechocystis sp. PCC 6803. Plant physiology 139, 408 – 416

87.     Kropat, J. et al. 2005. A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element. Proceedings of the National Academy of Sciences of the United States of America 102, 18730

88.     Obenland, D. & Neipp, P. 2005. Chlorophyll fluorescence imaging allows early detection and localization of lemon rind injury following hot water treatment. HortScience 40, 1821 – 1823

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90.     Šetlíková, E., Šetlík, I., Küpper, H., Kasalický, V. & Prášil, O. 2005. The photosynthesis of individual algal cells during the cell cycle of Scenedesmus quadricauda studied by chlorophyll fluorescence kinetic microscopy. Photosynthesis research 84, 113 – 120

91.     Thornton, L. E., Keren, N., Ohad, I. & Pakrasi, H. B. 2005. Physcomitrella patens and Ceratodon purpureus, mosses as model organisms in photosynthesis studies. Photosynthesis research 83, 87 – 96

92.     Wingler, A., Brownhill, E. & Pourtau, N. 2005. Mechanisms of the light–dependent induction of cell death in tobacco plants with delayed senescence. Journal of experimental botany 56, 2897 – 2905

93.     Baerr, J. N., Thomas, J. D., Taylor, B. G., Rodermel, S. R. & Gray, G. R. 2005. Differential photosynthetic compensatory mechanisms exist in the immutans mutant of Arabidopsis thaliana.  Physiologia Plantarum 124, 390 – 402

94.     Adamec, F., Kaftan, D. & Nedbal, L. 2005. Stress-Induced filament fragmentation of calothrix elenkinii&